STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000005451Ankyrin repeat domain 27 (VPS9 domain). (888 aa)    
Predicted Functional Partners:
ENSSGRP00000004904
Vesicle-associated membrane protein 7-like.
    
 0.898
ENSSGRP00000017085
annotation not available
    
 0.898
vamp7
Vesicle-associated membrane protein 7.
    
 0.898
LOC107595689
Vacuolar protein sorting-associated protein 29-like.
    
 
 0.897
LOC107556946
Vacuolar protein sorting-associated protein 29 isoform X1.
    
 
 0.897
rab21
Ras-related protein Rab-21.
   
 0.868
ENSSGRP00000077242
RAB21, member RAS oncogene family.
   
 0.868
LOC107590564
Rab GTPase-binding effector protein 2-like.
    
 0.812
Rabep1
LOW QUALITY PROTEIN: rab GTPase-binding effector protein 1.
    
 0.812
ENSSGRP00000080880
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.812
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.