STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000005934Probable ATP-dependent RNA helicase DDX28. (150 aa)    
Predicted Functional Partners:
ENSSGRP00000013069
UTP3 small subunit processome component.
   
 0.988
ENSSGRP00000017321
U3 small nucleolar ribonucleoprotein protein LCP5.
   
 0.955
ENSSGRP00000108372
U3 small nucleolar ribonucleoprotein protein LCP5.
   
 0.955
ENSSGRP00000109659
EBNA1 binding protein 2.
   
 0.937
Ftsj3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 0.935
Pdcd11
RRNA biogenesis protein RRP5.
  
 0.926
Malsu1
Mitochondrial assembly of ribosomal large subunit protein 1.
   
 
 0.911
wdr46
U3 small nucleolar RNA-associated protein 7.
   
 0.907
ENSSGRP00000043667
U3 small nucleolar RNA-associated protein 7.
   
 0.907
brix1
Biogenesis of ribosomes BRX1.
   
 
 0.906
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.