STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000006007annotation not available (65 aa)    
Predicted Functional Partners:
tmem169
X-ray repair cross-complementing protein 5-like.
    
 0.995
Prkdc
DNA-dependent protein kinase catalytic subunit isoform X1.
    
 0.977
ENSSGRP00000060416
annotation not available
    
 0.974
lig4
DNA ligase 4.
    
 0.974
LOC107554059
X-ray repair cross-complementing protein 6-like.
    
 0.947
ENSSGRP00000105234
X-ray repair cross-complementing protein 6-like.
    
 0.947
ENSSGRP00000052751
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
   
 
 0.775
ENSSGRP00000089862
DNA cross-link repair 1C protein.
   
 
 0.775
ENSSGRP00000090583
LOW QUALITY PROTEIN: DNA ligase 1-like.
    
 0.715
LOC107600072
DNA ligase 1-like isoform X1.
    
 0.715
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.