STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000006240Syndetin-like. (957 aa)    
Predicted Functional Partners:
vps53
Vacuolar protein sorting-associated protein 53 homolog isoform X1.
    
 
 0.985
ENSSGRP00000104650
VPS53 subunit of GARP complex.
    
 
 0.985
LOC107548861
Vacuolar protein sorting-associated protein 51 homolog.
    
 
 0.971
LOC107555159
Vacuolar protein sorting-associated protein 51 homolog.
    
 
 0.971
ENSSGRP00000007198
annotation not available
   
 
 0.933
vps52
Vacuolar protein sorting-associated protein 52 homolog.
   
 
 0.933
LOC107598476
Vacuolar protein sorting-associated protein 54-like isoform X1.
   
 
 0.894
ENSSGRP00000082258
Vacuolar protein sorting-associated protein 54-like.
   
 
 0.894
Tssc1
EARP and GARP complex-interacting protein 1.
    
 
 0.893
LOC107589760
EARP and GARP complex-interacting protein 1.
    
 
 0.893
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.