Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000006331Collagen alpha-1(V) chain-like. (210 aa)    
Predicted Functional Partners:
ENSSGRP00000024543
Collagen alpha-2(IX) chain-like.
     
  0.880
ENSSGRP00000068426
Collagen alpha-1(XXIV) chain-like.
     
  0.880
Col9a3
Collagen alpha-3(IX) chain.
     
  0.880
ENSSGRP00000028424
Collagen alpha-2(V) chain-like isoform X1.
     
  0.822
Col1a2
Collagen alpha-2(I) chain.
     
  0.822
ENSSGRP00000073436
Collagen alpha-2(V) chain-like isoform X1.
     
  0.822
ENSSGRP00000106373
Collagen alpha-2(I) chain-like.
     
  0.822
ENSSGRP00000005029
Collagen alpha-1(I) chain-like.
     
  0.766
ENSSGRP00000057351
Collagen alpha-1(I) chain-like.
     
  0.766
ENSSGRP00000098954
Collagen alpha-1(I) chain-like.
     
  0.766
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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