STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf40aPre-mRNA-processing factor 40 homolog A isoform X1. (851 aa)    
Predicted Functional Partners:
ENSSGRP00000012254
annotation not available
   
 0.894
LOC107588581
RNA-binding protein 25-like.
   
 0.894
ENSSGRP00000069786
RNA binding motif protein 25a.
   
 0.894
ENSSGRP00000073400
RNA binding motif protein 25b.
   
 0.894
Rbm25
RNA-binding protein 25.
   
 0.894
ENSSGRP00000094727
RNA binding motif protein 25b.
   
 0.894
ENSSGRP00000019359
Cell division cycle and apoptosis regulator 1.
   
  0.893
ENSSGRP00000096215
Cell division cycle and apoptosis regulator 1.
   
  0.893
LOC107588130
Splicing factor 1-like.
   
 0.850
LOC107562691
Splicing factor 1-like isoform X1.
   
 0.850
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.