LOC107581523 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107581523

Potassium channel subfamily K member 13-like. (412 aa)

Predicted Functional Partners:

LOC107553822

0.619

LOC107583653

0.619

ENSSGRP00000040246

0.550

KCNK4

0.550

ENSSGRP00000070445

0.550

KCNK4-2

0.550

LOC107553738

0.503

LOC107571180

0.503

ENSSGRP00000015646

0.474

ENSSGRP00000015929

0.474

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000015646	ENSSGRP00000040246	ENSSGRP00000015646	ENSSGRP00000040246	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 2-like.	0.545
ENSSGRP00000015646	ENSSGRP00000070445	ENSSGRP00000015646	ENSSGRP00000070445	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 4-like.	0.545
ENSSGRP00000015646	KCNK4	ENSSGRP00000015646	ENSSGRP00000069752	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 4.	0.545
ENSSGRP00000015646	KCNK4-2	ENSSGRP00000015646	ENSSGRP00000105845	Potassium channel, subfamily K, member 1b.	Potassium two pore domain channel subfamily K member 4.	0.545
ENSSGRP00000015646	LOC107553738	ENSSGRP00000015646	ENSSGRP00000001977	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 5-like.	0.567
ENSSGRP00000015646	LOC107553822	ENSSGRP00000015646	ENSSGRP00000006851	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 18-like.	0.729
ENSSGRP00000015646	LOC107571180	ENSSGRP00000015646	ENSSGRP00000019776	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 5-like.	0.567
ENSSGRP00000015646	LOC107581523	ENSSGRP00000015646	ENSSGRP00000006832	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 13-like.	0.474
ENSSGRP00000015646	LOC107583653	ENSSGRP00000015646	ENSSGRP00000012530	Potassium channel, subfamily K, member 1b.	Potassium channel subfamily K member 18-like.	0.729
ENSSGRP00000015929	ENSSGRP00000040246	ENSSGRP00000015929	ENSSGRP00000040246	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 2-like.	0.545
ENSSGRP00000015929	ENSSGRP00000070445	ENSSGRP00000015929	ENSSGRP00000070445	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 4-like.	0.545
ENSSGRP00000015929	KCNK4	ENSSGRP00000015929	ENSSGRP00000069752	Potassium channel, subfamily K, member 1a.	Potassium two pore domain channel subfamily K member 4.	0.545
ENSSGRP00000015929	KCNK4-2	ENSSGRP00000015929	ENSSGRP00000105845	Potassium channel, subfamily K, member 1a.	Potassium two pore domain channel subfamily K member 4.	0.545
ENSSGRP00000015929	LOC107553738	ENSSGRP00000015929	ENSSGRP00000001977	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 5-like.	0.567
ENSSGRP00000015929	LOC107553822	ENSSGRP00000015929	ENSSGRP00000006851	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 18-like.	0.729
ENSSGRP00000015929	LOC107571180	ENSSGRP00000015929	ENSSGRP00000019776	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 5-like.	0.567
ENSSGRP00000015929	LOC107581523	ENSSGRP00000015929	ENSSGRP00000006832	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 13-like.	0.474
ENSSGRP00000015929	LOC107583653	ENSSGRP00000015929	ENSSGRP00000012530	Potassium channel, subfamily K, member 1a.	Potassium channel subfamily K member 18-like.	0.729
ENSSGRP00000040246	ENSSGRP00000015646	ENSSGRP00000040246	ENSSGRP00000015646	Potassium channel subfamily K member 2-like.	Potassium channel, subfamily K, member 1b.	0.545
ENSSGRP00000040246	ENSSGRP00000015929	ENSSGRP00000040246	ENSSGRP00000015929	Potassium channel subfamily K member 2-like.	Potassium channel, subfamily K, member 1a.	0.545