Mycbp protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mycbp

C-Myc-binding protein. (96 aa)

Predicted Functional Partners:

ENSSGRP00000024868

0.919

ENSSGRP00000011528

0.833

ENSSGRP00000092030

0.808

ENSSGRP00000008751

0.783

ENSSGRP00000093283

0.783

ENSSGRP00000108765

0.783

ENSSGRP00000056389

0.752

Yars

0.652

ENSSGRP00000102125

0.652

LOC107597442

0.627

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000008751	ENSSGRP00000011528	ENSSGRP00000008751	ENSSGRP00000011528	Phosphoglycerate kinase 1-like.	WD repeat domain 90.	0.820
ENSSGRP00000008751	ENSSGRP00000102125	ENSSGRP00000008751	ENSSGRP00000102125	Phosphoglycerate kinase 1-like.	Tyrosine--tRNA ligase, cytoplasmic-like.	0.648
ENSSGRP00000008751	Mycbp	ENSSGRP00000008751	ENSSGRP00000007269	Phosphoglycerate kinase 1-like.	C-Myc-binding protein.	0.783
ENSSGRP00000008751	Yars	ENSSGRP00000008751	ENSSGRP00000033440	Phosphoglycerate kinase 1-like.	Tyrosine--tRNA ligase, cytoplasmic.	0.648
ENSSGRP00000011528	ENSSGRP00000008751	ENSSGRP00000011528	ENSSGRP00000008751	WD repeat domain 90.	Phosphoglycerate kinase 1-like.	0.820
ENSSGRP00000011528	ENSSGRP00000093283	ENSSGRP00000011528	ENSSGRP00000093283	WD repeat domain 90.	annotation not available	0.820
ENSSGRP00000011528	ENSSGRP00000108765	ENSSGRP00000011528	ENSSGRP00000108765	WD repeat domain 90.	Phosphoglycerate kinase 1.	0.820
ENSSGRP00000011528	Mycbp	ENSSGRP00000011528	ENSSGRP00000007269	WD repeat domain 90.	C-Myc-binding protein.	0.833
ENSSGRP00000024868	ENSSGRP00000056389	ENSSGRP00000024868	ENSSGRP00000056389	Leucine-rich repeats and guanylate kinase domain containing.	Si:dkey-208b23.5.	0.921
ENSSGRP00000024868	ENSSGRP00000092030	ENSSGRP00000024868	ENSSGRP00000092030	Leucine-rich repeats and guanylate kinase domain containing.	Si:ch73-81k8.2.	0.911
ENSSGRP00000024868	ENSSGRP00000102125	ENSSGRP00000024868	ENSSGRP00000102125	Leucine-rich repeats and guanylate kinase domain containing.	Tyrosine--tRNA ligase, cytoplasmic-like.	0.412
ENSSGRP00000024868	Mycbp	ENSSGRP00000024868	ENSSGRP00000007269	Leucine-rich repeats and guanylate kinase domain containing.	C-Myc-binding protein.	0.919
ENSSGRP00000024868	Yars	ENSSGRP00000024868	ENSSGRP00000033440	Leucine-rich repeats and guanylate kinase domain containing.	Tyrosine--tRNA ligase, cytoplasmic.	0.412
ENSSGRP00000056389	ENSSGRP00000024868	ENSSGRP00000056389	ENSSGRP00000024868	Si:dkey-208b23.5.	Leucine-rich repeats and guanylate kinase domain containing.	0.921
ENSSGRP00000056389	ENSSGRP00000092030	ENSSGRP00000056389	ENSSGRP00000092030	Si:dkey-208b23.5.	Si:ch73-81k8.2.	0.919
ENSSGRP00000056389	Mycbp	ENSSGRP00000056389	ENSSGRP00000007269	Si:dkey-208b23.5.	C-Myc-binding protein.	0.752
ENSSGRP00000092030	ENSSGRP00000024868	ENSSGRP00000092030	ENSSGRP00000024868	Si:ch73-81k8.2.	Leucine-rich repeats and guanylate kinase domain containing.	0.911
ENSSGRP00000092030	ENSSGRP00000056389	ENSSGRP00000092030	ENSSGRP00000056389	Si:ch73-81k8.2.	Si:dkey-208b23.5.	0.919
ENSSGRP00000092030	Mycbp	ENSSGRP00000092030	ENSSGRP00000007269	Si:ch73-81k8.2.	C-Myc-binding protein.	0.808
ENSSGRP00000093283	ENSSGRP00000011528	ENSSGRP00000093283	ENSSGRP00000011528	annotation not available	WD repeat domain 90.	0.820