STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000007654MIF4G domain-containing protein B-like. (123 aa)    
Predicted Functional Partners:
LOC107565777
Histone RNA hairpin-binding protein-like.
    
 
 0.930
ENSSGRP00000038727
Histone RNA hairpin-binding protein-like isoform X1.
    
 
 0.822
LOC107557071
Histone RNA hairpin-binding protein-like isoform X1.
    
 
 0.784
LOC107572851
ATP-dependent RNA helicase DDX19/DBP5.
    
   0.780
ENSSGRP00000054902
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).
    
   0.780
LOC107563149
ATP-dependent RNA helicase DDX19A-like.
    
   0.617
LOC107599485
ATP-dependent RNA helicase DDX19A-like.
    
   0.617
ska1
Spindle and kinetochore-associated protein 1.
      
 0.450
ENSSGRP00000062531
annotation not available
  
   
 0.404
ENSSGRP00000050883
MIF4G domain-containing protein B-like.
  
     0.401
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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