Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000007902Collagen, type XIV, alpha 1a. (1721 aa)    
Predicted Functional Partners:
ENSSGRP00000034405
finTRIM family, member 86.
     
 0.567
LOC107573124
Collagen alpha-2(VI) chain-like isoform X1.
   
 0.556
LOC107551805
Collagen alpha-2(VI) chain-like isoform X1.
   
 0.556
ENSSGRP00000054743
Parapinopsin-like.
     
 0.518
ENSSGRP00000012292
Collagen, type VI, alpha 1.
   
 0.447
ENSSGRP00000012295
annotation not available
   
 0.447
ENSSGRP00000091827
Collagen, type VI, alpha 1.
   
 0.447
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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