STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107553220E3 ubiquitin-protein ligase TRIM9 isoform X1. (717 aa)    
Predicted Functional Partners:
ENSSGRP00000001594
Netrin receptor DCC-like.
   
 
 0.579
ENSSGRP00000009822
Netrin receptor DCC-like.
   
 
 0.579
ENSSGRP00000020932
Neogenin-like.
   
 
 0.579
NEO1
Neogenin-like.
   
 
 0.579
ENSSGRP00000076198
Neogenin-like.
   
 
 0.579
Neo1
Neogenin.
   
 
 0.579
ENSSGRP00000039397
Immunoglobulin superfamily DCC subclass member 4-like.
   
 
 0.576
ENSSGRP00000043799
Immunoglobulin superfamily DCC subclass member 4-like.
   
 
 0.576
ENSSGRP00000095214
F-box/WD repeat-containing protein 11.
    
 0.549
ENSSGRP00000099007
F-box and WD repeat domain containing 11a.
    
 0.549
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.