STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107597138POU domain, class 3, transcription factor 1. (368 aa)    
Predicted Functional Partners:
snapc3
SnRNA-activating protein complex subunit 3.
   
 
  0.505
LOC107551645
Pre-mRNA cleavage complex 2 protein Pcf11-like.
     
 0.499
LOC107548175
Pre-mRNA cleavage complex 2 protein Pcf11-like.
     
 0.499
ENSSGRP00000036854
Small nuclear RNA activating complex, polypeptide 4.
    
  0.486
LOC107555491
SnRNA-activating protein complex subunit 4-like isoform X1.
    
  0.486
ENSSGRP00000009426
Transcription initiation factor TFIIB.
    
 0.463
LOC107589845
Transcription initiation factor IIB-like.
    
 0.463
LOC107581957
Transcription initiation factor TFIID subunit 9-like.
     
 0.441
LOC107587289
Transcription initiation factor TFIID subunit 9-like.
     
 0.441
ENSSGRP00000002488
Transcription factor SOX7/8/10/18 (SOX group E/F).
    
 0.436
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.