ENSSGRP00000008364 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000008364

Immunoresponsive gene 1, like. (439 aa)

Predicted Functional Partners:

ENSSGRP00000086290

0.791

LOC107597423

0.758

LOC107569254

0.758

ENSSGRP00000009494

0.749

Amt

0.749

ENSSGRP00000010125

0.737

Dmgdh

0.737

sardh

0.737

ENSSGRP00000036551

0.737

pdpr

0.737

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Amt	ENSSGRP00000008364	ENSSGRP00000058788	ENSSGRP00000008364	Aminomethyltransferase, mitochondrial.	Immunoresponsive gene 1, like.	0.749
Dmgdh	ENSSGRP00000008364	ENSSGRP00000018623	ENSSGRP00000008364	Dimethylglycine dehydrogenase, mitochondrial.	Immunoresponsive gene 1, like.	0.737
Dmgdh	sardh	ENSSGRP00000018623	ENSSGRP00000020037	Dimethylglycine dehydrogenase, mitochondrial.	Sarcosine dehydrogenase, mitochondrial isoform X1.	0.928
ENSSGRP00000008364	Amt	ENSSGRP00000008364	ENSSGRP00000058788	Immunoresponsive gene 1, like.	Aminomethyltransferase, mitochondrial.	0.749
ENSSGRP00000008364	Dmgdh	ENSSGRP00000008364	ENSSGRP00000018623	Immunoresponsive gene 1, like.	Dimethylglycine dehydrogenase, mitochondrial.	0.737
ENSSGRP00000008364	ENSSGRP00000009494	ENSSGRP00000008364	ENSSGRP00000009494	Immunoresponsive gene 1, like.	Aminomethyltransferase.	0.749
ENSSGRP00000008364	ENSSGRP00000010125	ENSSGRP00000008364	ENSSGRP00000010125	Immunoresponsive gene 1, like.	Sarcosine dehydrogenase.	0.737
ENSSGRP00000008364	ENSSGRP00000036551	ENSSGRP00000008364	ENSSGRP00000036551	Immunoresponsive gene 1, like.	annotation not available	0.737
ENSSGRP00000008364	ENSSGRP00000086290	ENSSGRP00000008364	ENSSGRP00000086290	Immunoresponsive gene 1, like.	GTP binding protein 3, mitochondrial.	0.791
ENSSGRP00000008364	LOC107569254	ENSSGRP00000008364	ENSSGRP00000101266	Immunoresponsive gene 1, like.	Cytochrome c oxidase assembly protein subunit 17.	0.758
ENSSGRP00000008364	LOC107597423	ENSSGRP00000008364	ENSSGRP00000071635	Immunoresponsive gene 1, like.	Cytochrome c oxidase assembly protein subunit 17.	0.758
ENSSGRP00000008364	pdpr	ENSSGRP00000008364	ENSSGRP00000098168	Immunoresponsive gene 1, like.	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.	0.737
ENSSGRP00000008364	sardh	ENSSGRP00000008364	ENSSGRP00000020037	Immunoresponsive gene 1, like.	Sarcosine dehydrogenase, mitochondrial isoform X1.	0.737
ENSSGRP00000009494	ENSSGRP00000008364	ENSSGRP00000009494	ENSSGRP00000008364	Aminomethyltransferase.	Immunoresponsive gene 1, like.	0.749
ENSSGRP00000010125	ENSSGRP00000008364	ENSSGRP00000010125	ENSSGRP00000008364	Sarcosine dehydrogenase.	Immunoresponsive gene 1, like.	0.737
ENSSGRP00000036551	ENSSGRP00000008364	ENSSGRP00000036551	ENSSGRP00000008364	annotation not available	Immunoresponsive gene 1, like.	0.737
ENSSGRP00000086290	ENSSGRP00000008364	ENSSGRP00000086290	ENSSGRP00000008364	GTP binding protein 3, mitochondrial.	Immunoresponsive gene 1, like.	0.791
LOC107569254	ENSSGRP00000008364	ENSSGRP00000101266	ENSSGRP00000008364	Cytochrome c oxidase assembly protein subunit 17.	Immunoresponsive gene 1, like.	0.758
LOC107569254	LOC107597423	ENSSGRP00000101266	ENSSGRP00000071635	Cytochrome c oxidase assembly protein subunit 17.	Cytochrome c oxidase assembly protein subunit 17.	0.901
LOC107597423	ENSSGRP00000008364	ENSSGRP00000071635	ENSSGRP00000008364	Cytochrome c oxidase assembly protein subunit 17.	Immunoresponsive gene 1, like.	0.758