STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107555913Vesicle-trafficking protein SEC22a-like. (303 aa)    
Predicted Functional Partners:
ENSSGRP00000008659
Bet1 golgi vesicular membrane trafficking protein.
   
 0.941
bet1
Blocked early in transport 1.
   
 0.941
ENSSGRP00000085295
Golgi SNAP receptor complex member 2-like.
    
 0.936
ENSSGRP00000100990
Golgi SNAP receptor complex member 2.
    
 0.936
ENSSGRP00000029147
Sec1 family domain containing 1.
   
 0.931
scfd1
G2/M phase-specific E3 ubiquitin-protein ligase-like.
   
 0.931
ENSSGRP00000049772
Protein transport protein Sec24B-like.
    
 0.926
LOC107596339
Protein transport protein Sec24B-like isoform X1.
    
 0.926
ENSSGRP00000008867
annotation not available
    
 0.912
Ykt6
Synaptobrevin homolog YKT6.
    
 0.912
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.