STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107567862Homeobox protein notochord-like. (241 aa)    
Predicted Functional Partners:
LOC107577477
Brachyury protein homolog A.
    
 0.762
LOC107550642
Brachyury protein homolog A-like.
    
 0.762
foxa2
Forkhead box protein A2, hepatocyte nuclear factor 3-beta.
    
 0.608
LOC107558496
Forkhead box protein A2, hepatocyte nuclear factor 3-beta.
    
 0.608
LOC107563178
T-box-containing protein TBX6L-like isoform X1.
   
 
 0.587
LOC107556237
T-box-containing protein TBX6L-like.
   
 
 0.587
foxa1
Forkhead box protein A1, hepatocyte nuclear factor 3-alpha.
    
 0.567
TBXT
T-box transcription factor T.
    
 0.563
ENSSGRP00000061564
T-box transcription factor TBX19-like.
    
 0.563
ENSSGRP00000098216
Brachyury protein-like.
    
 0.563
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.