ENSSGRP00000008908 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSGRP00000008908

annotation not available (217 aa)

Predicted Functional Partners:

LOC107597710

0.945

TNFAIP3

0.945

ENSSGRP00000002429

0.943

LOC107584407

0.943

ENSSGRP00000030473

0.910

ENSSGRP00000057067

0.910

ENSSGRP00000089091

0.910

LOC107550806

0.910

ENSSGRP00000044793

0.854

ENSSGRP00000058423

0.854

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002429	ENSSGRP00000008908	ENSSGRP00000002429	ENSSGRP00000008908	Mitogen-activated protein kinase kinase kinase 8-like.	annotation not available	0.943
ENSSGRP00000002429	ENSSGRP00000044793	ENSSGRP00000002429	ENSSGRP00000044793	Mitogen-activated protein kinase kinase kinase 8-like.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2.	0.880
ENSSGRP00000002429	ENSSGRP00000058423	ENSSGRP00000002429	ENSSGRP00000058423	Mitogen-activated protein kinase kinase kinase 8-like.	Nuclear factor NF-kappa-B p105 subunit-like.	0.987
ENSSGRP00000008908	ENSSGRP00000002429	ENSSGRP00000008908	ENSSGRP00000002429	annotation not available	Mitogen-activated protein kinase kinase kinase 8-like.	0.943
ENSSGRP00000008908	ENSSGRP00000030473	ENSSGRP00000008908	ENSSGRP00000030473	annotation not available	Polyubiquitin-C isoform X1.	0.910
ENSSGRP00000008908	ENSSGRP00000044793	ENSSGRP00000008908	ENSSGRP00000044793	annotation not available	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2.	0.854
ENSSGRP00000008908	ENSSGRP00000057067	ENSSGRP00000008908	ENSSGRP00000057067	annotation not available	Tumor necrosis factor receptor superfamily member 1A-like.	0.910
ENSSGRP00000008908	ENSSGRP00000058423	ENSSGRP00000008908	ENSSGRP00000058423	annotation not available	Nuclear factor NF-kappa-B p105 subunit-like.	0.854
ENSSGRP00000008908	ENSSGRP00000089091	ENSSGRP00000008908	ENSSGRP00000089091	annotation not available	Polyubiquitin-B-like isoform X1.	0.910
ENSSGRP00000008908	LOC107550806	ENSSGRP00000008908	ENSSGRP00000111843	annotation not available	Tumor necrosis factor receptor superfamily member 1A-like.	0.910
ENSSGRP00000008908	LOC107584407	ENSSGRP00000008908	ENSSGRP00000048071	annotation not available	Mitogen-activated protein kinase kinase kinase 8-like.	0.943
ENSSGRP00000008908	LOC107597710	ENSSGRP00000008908	ENSSGRP00000035382	annotation not available	Tumor necrosis factor alpha-induced protein 3-like.	0.945
ENSSGRP00000008908	TNFAIP3	ENSSGRP00000008908	ENSSGRP00000049280	annotation not available	TNF alpha induced protein 3.	0.945
ENSSGRP00000030473	ENSSGRP00000008908	ENSSGRP00000030473	ENSSGRP00000008908	Polyubiquitin-C isoform X1.	annotation not available	0.910
ENSSGRP00000030473	ENSSGRP00000044793	ENSSGRP00000030473	ENSSGRP00000044793	Polyubiquitin-C isoform X1.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2.	0.613
ENSSGRP00000030473	ENSSGRP00000057067	ENSSGRP00000030473	ENSSGRP00000057067	Polyubiquitin-C isoform X1.	Tumor necrosis factor receptor superfamily member 1A-like.	0.662
ENSSGRP00000030473	ENSSGRP00000058423	ENSSGRP00000030473	ENSSGRP00000058423	Polyubiquitin-C isoform X1.	Nuclear factor NF-kappa-B p105 subunit-like.	0.613
ENSSGRP00000030473	LOC107550806	ENSSGRP00000030473	ENSSGRP00000111843	Polyubiquitin-C isoform X1.	Tumor necrosis factor receptor superfamily member 1A-like.	0.662
ENSSGRP00000030473	LOC107597710	ENSSGRP00000030473	ENSSGRP00000035382	Polyubiquitin-C isoform X1.	Tumor necrosis factor alpha-induced protein 3-like.	0.929
ENSSGRP00000030473	TNFAIP3	ENSSGRP00000030473	ENSSGRP00000049280	Polyubiquitin-C isoform X1.	TNF alpha induced protein 3.	0.929