STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107579146E3 ubiquitin-protein ligase UBR5-like. (302 aa)    
Predicted Functional Partners:
Trip12
E3 ubiquitin-protein ligase TRIP12.
   
  
 0.968
ENSSGRP00000084766
E3 ubiquitin-protein ligase TRIP12-like.
   
  
 0.968
USP34
Ubiquitin carboxyl-terminal hydrolase 34-like.
   
  
 0.772
LOC107567735
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 
 0.729
ENSSGRP00000004833
annotation not available
    
 
 0.729
LOC107567735-2
ubiquitin-40S ribosomal protein S27a.
    
 
 0.729
ENSSGRP00000030473
Polyubiquitin-C isoform X1.
    
 
 0.728
ENSSGRP00000083272
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.728
ENSSGRP00000089091
Polyubiquitin-B-like isoform X1.
    
 
 0.728
ENSSGRP00000106616
annotation not available
    
   0.728
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.