Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107591926Pleckstrin homology domain-containing family F member 2-like. (245 aa)    
Predicted Functional Partners:
ENSSGRP00000111400
Pleckstrin homology domain-containing family H member 2-like.
      
 0.791
Neurl1b
E3 ubiquitin-protein ligase NEURL1B.
      
 0.659
LOC107551008
E3 ubiquitin-protein ligase NEURL1B-like isoform X1.
      
 0.659
LOC107574059
Protein FAM43A-like.
      
 0.658
LOC107551800
Protein FAM43A-like.
      
 0.658
ENSSGRP00000020987
Uncharacterized protein LOC107558662.
    
   0.644
ENSSGRP00000049434
annotation not available
    
   0.644
ENSSGRP00000001283
Sorting nexin 29.
    
 0.642
ENSSGRP00000068607
Sorting nexin-29-like.
    
 0.642
LOC107591605
Nuclear transcription factor Y subunit gamma.
    
   0.634
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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