STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107585739SPRY domain-containing SOCS box protein 4-like. (281 aa)    
Predicted Functional Partners:
LOC107560250
Transcription elongation factor B polypeptide 1-like.
    
 0.839
LOC107550711
Transcription elongation factor B polypeptide 1.
    
 0.839
LOC107550711-2
Transcription elongation factor B polypeptide 1.
    
 0.839
skp1
S-phase kinase-associated protein 1 isoform X1.
   
 0.785
ENSSGRP00000075848
E3 ubiquitin-protein ligase MYCBP2.
    
 
 0.704
ENSSGRP00000111645
E3 ubiquitin-protein ligase MYCBP2-like.
    
 
 0.704
LOC107551625
Cullin-5-like.
    
 0.684
LOC107582587
Cullin-5.
    
 0.684
ENSSGRP00000092179
Cullin-5-like.
    
 0.684
LOC107548163
Cullin-5-like isoform X1.
    
 0.684
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.