STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107581540Coiled-coil domain-containing protein 12-like. (163 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40.
    
  0.990
ENSSGRP00000013227
Cell division cycle 40 homolog (S. cerevisiae).
    
  0.990
prpf19
Pre-mRNA-processing factor 19.
    
   0.964
ENSSGRP00000112991
Pre-mRNA-processing factor 19-like.
    
   0.964
ENSSGRP00000054041
LOW QUALITY PROTEIN: cell division cycle 5-like protein.
    
   0.963
ENSSGRP00000112821
Cell division cycle 5-like protein.
    
   0.963
wdr25
WD repeat-containing protein 25.
    
  0.955
ENSSGRP00000065776
annotation not available
    
 0.935
gpatch1
G patch domain-containing protein 1.
    
 0.935
LOC107559132
Crooked neck-like protein 1.
    
   0.910
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: low (32%) [HD]