Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000010252Ro60, Y RNA binding protein. (333 aa)    
Predicted Functional Partners:
LOC107557125
Lupus La protein-like.
    
 
 0.910
ssb
Lupus La protein.
    
 
 0.910
larp7
La-related protein 7.
    
 
 0.741
ENSSGRP00000071873
Conserved oligomeric Golgi complex subunit 3-like.
    
   0.737
ENSSGRP00000102051
Conserved oligomeric Golgi complex subunit 3-like.
    
   0.737
LOC107586117
Exportin-7.
    
   0.689
ENSSGRP00000104654
Exportin 7.
    
   0.689
ENSSGRP00000027190
Pre-mRNA 3'-end-processing factor FIP1-like.
      
 0.627
LOC107561793
Calcidiol 1-monooxygenase (25-hydroxyvitamin D3 1alpha-hydroxylase).
      
 0.606
ENSSGRP00000008207
Primase and polymerase (DNA-directed).
      
 0.554
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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