Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSSGRP00000010314zRAB1B, member RAS oncogene family a. (122 aa)    
Predicted Functional Partners:
RABGGTB
Geranylgeranyl transferase type-2 subunit beta-like isoform X1.
    
 0.923
G3bp2
Ras GTPase-activating protein-binding protein 2.
   
 0.892
ENSSGRP00000032659
USO1 vesicle transport factor.
   
 0.892
TRAPPC3
Trafficking protein particle complex subunit 3.
   
 0.875
LOC107564495
Trafficking protein particle complex subunit 3.
   
 0.875
TRAPPC2B
Trafficking protein particle complex subunit 2.
    
 0.866
ENSSGRP00000016845
Trafficking protein particle complex subunit 8-like isoform X1.
    
 0.851
ENSSGRP00000110457
Trafficking protein particle complex subunit 8-like.
    
 0.851
LOC107550417
Transmembrane emp24 domain-containing protein 10-like.
   
 0.842
LOC107593259
Transmembrane protein Tmp21-like.
   
 0.842
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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