STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107599804DNA excision repair protein ERCC-8-like. (400 aa)    
Predicted Functional Partners:
ENSSGRP00000041925
Damage-specific DNA binding protein 1.
    
 0.999
LOC107583755
DNA damage-binding protein 2-like.
    
 0.981
LOC107596991
DNA damage-binding protein 2.
    
 0.981
LOC107588615
DNA excision repair protein ERCC-6-like.
    
 0.980
ENSSGRP00000089850
annotation not available
    
 0.980
ENSSGRP00000089852
annotation not available
    
 0.980
polr2d
DNA-directed RNA polymerase II subunit RPB4.
    
  0.972
ENSSGRP00000041033
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.971
leo1
RNA polymerase-associated protein LEO1.
    
 
 0.971
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
  0.968
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.