STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107603279Cytosolic carboxypeptidase protein 6. (548 aa)    
Predicted Functional Partners:
LOC107593000
Tubulin polyglutamylase TTLL4-like isoform X1.
    
 
 0.682
ENSSGRP00000085856
Tubulin--tyrosine ligase-like protein 12.
      
 0.491
ENSSGRP00000089842
Tubulin polyglutamylase TTLL5-like.
      
 0.476
ttll5
Tubulin polyglutamylase TTLL5 isoform X1.
      
 0.476
mrps27
28S ribosomal protein S27, mitochondrial.
     
 0.460
LOC107569656
Apoptosis facilitator Bcl-2-like protein 14 isoform X1.
      
 0.448
ENSSGRP00000056173
annotation not available
      
 0.448
LOC107583803
Apoptosis facilitator Bcl-2-like protein 14.
      
 0.448
ENSSGRP00000071144
Tubulin tyrosine ligase-like family, member 9.
      
 0.407
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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