Gcat protein (Sinocyclocheilus grahami) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Gcat

2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial. (220 aa)

Predicted Functional Partners:

ENSSGRP00000031462

0.897

LOC107581676

0.897

LOC107585700

0.884

LOC107589852

0.884

LOC107594144

0.878

ENSSGRP00000112788

0.875

ENSSGRP00000010125

0.874

sardh

0.874

ENSSGRP00000031541

0.863

gldc

0.863

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010125	ENSSGRP00000031462	ENSSGRP00000010125	ENSSGRP00000031462	Sarcosine dehydrogenase.	Threonine aldolase 1.	0.894
ENSSGRP00000010125	ENSSGRP00000031541	ENSSGRP00000010125	ENSSGRP00000031541	Sarcosine dehydrogenase.	Glycine dehydrogenase (decarboxylating).	0.981
ENSSGRP00000010125	Gcat	ENSSGRP00000010125	ENSSGRP00000010434	Sarcosine dehydrogenase.	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial.	0.874
ENSSGRP00000010125	LOC107581676	ENSSGRP00000010125	ENSSGRP00000033844	Sarcosine dehydrogenase.	Probable low-specificity L-threonine aldolase 2.	0.894
ENSSGRP00000010125	LOC107585700	ENSSGRP00000010125	ENSSGRP00000010631	Sarcosine dehydrogenase.	Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.	0.901
ENSSGRP00000010125	LOC107589852	ENSSGRP00000010125	ENSSGRP00000103831	Sarcosine dehydrogenase.	Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.	0.901
ENSSGRP00000010125	gldc	ENSSGRP00000010125	ENSSGRP00000069166	Sarcosine dehydrogenase.	Glycine dehydrogenase (decarboxylating), mitochondrial.	0.981
ENSSGRP00000031462	ENSSGRP00000010125	ENSSGRP00000031462	ENSSGRP00000010125	Threonine aldolase 1.	Sarcosine dehydrogenase.	0.894
ENSSGRP00000031462	ENSSGRP00000031541	ENSSGRP00000031462	ENSSGRP00000031541	Threonine aldolase 1.	Glycine dehydrogenase (decarboxylating).	0.924
ENSSGRP00000031462	ENSSGRP00000112788	ENSSGRP00000031462	ENSSGRP00000112788	Threonine aldolase 1.	L-threonine 3-dehydrogenase, mitochondrial-like.	0.875
ENSSGRP00000031462	Gcat	ENSSGRP00000031462	ENSSGRP00000010434	Threonine aldolase 1.	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial.	0.897
ENSSGRP00000031462	LOC107585700	ENSSGRP00000031462	ENSSGRP00000010631	Threonine aldolase 1.	Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.	0.930
ENSSGRP00000031462	LOC107589852	ENSSGRP00000031462	ENSSGRP00000103831	Threonine aldolase 1.	Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.	0.930
ENSSGRP00000031462	LOC107594144	ENSSGRP00000031462	ENSSGRP00000052952	Threonine aldolase 1.	L-threonine 3-dehydrogenase, mitochondrial-like.	0.875
ENSSGRP00000031462	gldc	ENSSGRP00000031462	ENSSGRP00000069166	Threonine aldolase 1.	Glycine dehydrogenase (decarboxylating), mitochondrial.	0.924
ENSSGRP00000031462	sardh	ENSSGRP00000031462	ENSSGRP00000020037	Threonine aldolase 1.	Sarcosine dehydrogenase, mitochondrial isoform X1.	0.894
ENSSGRP00000031541	ENSSGRP00000010125	ENSSGRP00000031541	ENSSGRP00000010125	Glycine dehydrogenase (decarboxylating).	Sarcosine dehydrogenase.	0.981
ENSSGRP00000031541	ENSSGRP00000031462	ENSSGRP00000031541	ENSSGRP00000031462	Glycine dehydrogenase (decarboxylating).	Threonine aldolase 1.	0.924
ENSSGRP00000031541	Gcat	ENSSGRP00000031541	ENSSGRP00000010434	Glycine dehydrogenase (decarboxylating).	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial.	0.863
ENSSGRP00000031541	LOC107581676	ENSSGRP00000031541	ENSSGRP00000033844	Glycine dehydrogenase (decarboxylating).	Probable low-specificity L-threonine aldolase 2.	0.924