Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107560206Poly(A) polymerase beta-like isoform X1. (738 aa)    
Predicted Functional Partners:
ENSSGRP00000065441
E3 ubiquitin-protein ligase RBBP6-like isoform X1.
   
 0.972
LOC107550069
Cleavage and polyadenylation specificity factor subunit 1-like.
   
 0.962
ENSSGRP00000027190
Pre-mRNA 3'-end-processing factor FIP1-like.
   
 0.961
YTHDC2
Probable ATP-dependent RNA helicase YTHDC2.
   
 0.951
ENSSGRP00000018020
annotation not available
   
 0.951
LOC107551645
Pre-mRNA cleavage complex 2 protein Pcf11-like.
    
 0.944
LOC107549104
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.944
LOC107601862
Cleavage and polyadenylation specificity factor subunit 3-like.
   
 0.944
LOC107548175
Pre-mRNA cleavage complex 2 protein Pcf11-like.
    
 0.944
CPSF4
Cleavage and polyadenylation specificity factor subunit 4.
    
 0.938
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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