Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107577477Brachyury protein homolog A. (276 aa)    
Predicted Functional Partners:
ENSSGRP00000059028
Homeobox protein Mix.1-like.
   
 0.870
LOC107603100
Homeobox protein Mix.2-like.
   
 0.870
LOC107584521
POU domain, class 5, transcription factor 1.
   
 0.843
foxa2
Forkhead box protein A2, hepatocyte nuclear factor 3-beta.
    
 0.838
LOC107558496
Forkhead box protein A2, hepatocyte nuclear factor 3-beta.
    
 0.838
LOC107582567
Homeobox protein not2-like.
    
 0.827
LOC107567862
Homeobox protein notochord-like.
    
 0.827
ENSSGRP00000016636
SRY-box transcription factor 17.
    
 0.804
ENSSGRP00000067024
LOW QUALITY PROTEIN: forkhead box protein H1-like.
   
 
 0.736
ENSSGRP00000097852
LOW QUALITY PROTEIN: forkhead box protein H1-like.
   
 
 0.736
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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