STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000010659DEAD (Asp-Glu-Ala-Asp) box polypeptide 47. (135 aa)    
Predicted Functional Partners:
ENSSGRP00000013069
UTP3 small subunit processome component.
   
 0.999
Pdcd11
RRNA biogenesis protein RRP5.
  
 0.991
ENSSGRP00000017321
U3 small nucleolar ribonucleoprotein protein LCP5.
   
 0.989
ENSSGRP00000108372
U3 small nucleolar ribonucleoprotein protein LCP5.
   
 0.989
Ftsj3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 0.982
ENSSGRP00000109659
EBNA1 binding protein 2.
   
 0.976
ENSSGRP00000041844
Protein AATF-like isoform X1.
   
 
 0.963
wdr46
U3 small nucleolar RNA-associated protein 7.
   
 0.961
ENSSGRP00000043667
U3 small nucleolar RNA-associated protein 7.
   
 0.961
ddx52
Probable ATP-dependent RNA helicase DDX52 isoform X1.
   
 0.948
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.