Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107594427Lymphoid enhancer-binding factor 1-like. (371 aa)    
Predicted Functional Partners:
LOC107570993
Catenin beta-1 isoform X1.
    
 0.990
ENSSGRP00000067405
Catenin beta-1-like.
    
 0.990
ctnnb1
Catenin beta 1.
    
 0.981
LOC107592060
Catenin beta-1-like.
    
 0.981
ENSSGRP00000040726
Nemo-like kinase, type 2.
    
 0.978
ENSSGRP00000048678
Nemo-like kinase, type 1.
    
 0.978
ENSSGRP00000059386
Serine/threonine-protein kinase NLK.
    
 0.978
LOC107582859
Serine/threonine-protein kinase NLK2-like.
    
 0.978
ENSSGRP00000079598
Transcription factor 7.
   
0.971
ENSSGRP00000086962
Transcription factor 7-like 2.
   
0.971
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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