Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107556486WD repeat-containing protein 6-like isoform X1. (1198 aa)    
Predicted Functional Partners:
LOC107591736
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase isoform X1.
   
 
 0.959
LOC107589293
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase.
   
 
 0.959
LOC107559694
U3 small nucleolar RNA-associated protein 15 homolog.
   
    0.801
LOC107600050
U3 small nucleolar RNA-associated protein 15 homolog.
   
    0.801
ENSSGRP00000010003
Mitochondrial rRNA methyltransferase 2.
   
 
 0.793
mrm2
23S rRNA (uridine2552-2'-O)-methyltransferase.
   
 
 0.793
ENSSGRP00000043602
annotation not available
    
   0.785
ENSSGRP00000112096
annotation not available
    
   0.785
ENSSGRP00000071420
WD repeat domain 3.
   
  
 0.774
LOC107563281
Small integral membrane protein 12-like.
   
   0.774
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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