STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107590564Rab GTPase-binding effector protein 2-like. (457 aa)    
Predicted Functional Partners:
LOC107577469
Rab5 GDP/GTP exchange factor-like isoform X1.
    
 0.999
ENSSGRP00000034707
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.999
ENSSGRP00000055376
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.999
ENSSGRP00000071444
annotation not available
    
 0.999
LOC107586353
ADP-ribosylation factor-binding protein GGA1-like.
    
 0.874
ENSSGRP00000101877
ADP-ribosylation factor-binding protein GGA1-like.
    
 0.874
ENSSGRP00000005451
Ankyrin repeat domain 27 (VPS9 domain).
    
 0.812
LOC107550582
GTPase-activating protein and VPS9 domain-containing protein 1-like isoform X1.
    
 0.812
LOC107555697
Ankyrin repeat domain-containing protein 27-like isoform X1.
    
 0.812
ENSSGRP00000073287
GTPase-activating protein and VPS9 domain-containing protein 1-like.
    
 0.812
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.