STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107562958Protein phosphatase 1D-like. (507 aa)    
Predicted Functional Partners:
LOC107564048
Protein phosphatase 1D-like.
  
  
 
0.903
LOC107548567
Protein phosphatase 1D-like isoform X1.
  
  
 
0.900
ENSSGRP00000038462
Checkpoint kinase 2.
    
 
 0.664
ENSSGRP00000079966
Checkpoint kinase 2.
    
 
 0.664
Atm
Serine-protein kinase ATM.
      
 0.632
ENSSGRP00000010292
annotation not available
     
 0.624
Cbfb
Core-binding factor subunit beta.
     
 0.624
ENSSGRP00000051536
Core-binding factor subunit beta.
     
 0.624
ENSSGRP00000080283
Core-binding factor subunit beta-like isoform X1.
     
 0.624
LOC107572061
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.605
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.