Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107554323E3 ubiquitin-protein ligase listerin-like. (1689 aa)    
Predicted Functional Partners:
ENSSGRP00000067838
Nuclear export mediator factor Nemf-like.
   
 0.996
Tcf25
Transcription factor 25.
   
 0.994
ENSSGRP00000051201
Ribosomal protein L15.
    
 0.936
ENSSGRP00000084072
Large subunit ribosomal protein L23Ae.
    
 0.934
rpl23a
Large subunit ribosomal protein L23Ae.
    
 0.934
LOC107551170
Large subunit ribosomal protein L3e.
    
 0.932
ENSSGRP00000026385
Ribosomal protein L3.
    
 0.932
ENSSGRP00000005346
Large subunit ribosomal protein L17e.
    
  0.916
LOC107583572
Large subunit ribosomal protein L13Ae.
    
  0.916
LOC107589447
Large subunit ribosomal protein L11e.
    
 0.903
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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