STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107554323E3 ubiquitin-protein ligase listerin-like. (1689 aa)    
Predicted Functional Partners:
ENSSGRP00000067838
Nuclear export mediator factor Nemf-like.
    
 
 0.991
Trip12
E3 ubiquitin-protein ligase TRIP12.
   
 
 0.942
ENSSGRP00000084766
E3 ubiquitin-protein ligase TRIP12-like.
   
 
 0.942
Tcf25
Transcription factor 25.
   
 
 0.847
LOC107583572
Large subunit ribosomal protein L13Ae.
    
   0.842
ENSSGRP00000051201
Ribosomal protein L15.
    
   0.829
LOC107567628
Large subunit ribosomal protein L37Ae.
    
   0.829
ENSSGRP00000084072
Large subunit ribosomal protein L23Ae.
    
 
 0.822
rpl23a
Large subunit ribosomal protein L23Ae.
    
 
 0.822
LOC107589447
Large subunit ribosomal protein L11e.
    
 
 0.806
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.