Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107578331Peripherin-2-like. (342 aa)    
Predicted Functional Partners:
ENSSGRP00000013586
Rhodopsin.
   
  
 0.768
ENSSGRP00000048396
Rhodopsin, like.
   
  
 0.736
LOC107551427
Rhodopsin-like.
   
  
 0.736
ENSSGRP00000004013
annotation not available
      
 0.692
ENSSGRP00000002257
annotation not available
   
  
 0.690
LOC107584449
Green-sensitive opsin-4.
   
  
 0.690
LOC107567079
Green-sensitive opsin-2.
   
  
 0.690
RHO
Rhodopsin.
   
  
 0.690
ENSSGRP00000058985
Opsin 1 (cone pigments), medium-wave-sensitive, 3.
   
  
 0.641
ENSSGRP00000060156
Interphotoreceptor matrix proteoglycan 1-like.
   
  
 0.606
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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