STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107587813Lamin-A-like. (657 aa)    
Predicted Functional Partners:
CASP6
Caspase-6-like.
   
 0.966
LOC107595882
Granzyme B-like.
    
 0.902
ENSSGRP00000105500
Granzyme F-like.
    
 0.902
LOC107570004
Granzyme B(G,H)-like.
    
 0.902
LOC107579078
Barrier-to-autointegration factor-like.
   
 0.820
LOC107548237
Barrier-to-autointegration factor.
   
 0.820
ENSSGRP00000061920
Si:dkey-211g8.4.
   
 0.809
ENSSGRP00000061923
Si:dkey-211g8.4.
   
 0.809
LOC107560939
Emerin-like.
    
 0.798
LOC107570273
Emerin-like.
    
 0.798
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.