Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107587813Lamin-A-like. (657 aa)    
Predicted Functional Partners:
LOC107570199
Lamin-L(III)-like isoform X1.
     
  0.910
CASP6
Caspase-6-like.
    
 0.902
LOC107582983
Caspase-6-like.
    
 0.902
LOC107579078
Barrier-to-autointegration factor-like.
    
 0.862
LOC107548237
Barrier-to-autointegration factor.
    
 0.862
ENSSGRP00000066302
Sad1 and UNC84 domain containing 1.
    
 0.858
LOC107565618
SUN domain-containing protein 1-like isoform X1.
    
 0.858
ENSSGRP00000044997
annotation not available
    
 0.852
lemd3
Inner nuclear membrane protein Man1.
    
 0.844
ENSSGRP00000061920
Si:dkey-211g8.4.
    
 0.844
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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