Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
LOC107552722Tropomyosin alpha-1 chain-like isoform X1. (289 aa)    
Predicted Functional Partners:
LOC107549542
Actin, alpha cardiac muscle 1.
   
 0.870
ENSSGRP00000000104
Troponin T2c, cardiac.
   
 0.869
LOC107560724
Troponin T, cardiac muscle-like isoform X1.
   
 0.869
LOC107555938
Myosin light chain 1, skeletal muscle isoform-like.
   
 0.854
LOC107596080
Myosin light chain 1, skeletal muscle isoform-like.
   
 0.854
ENSSGRP00000004999
Troponin T, cardiac muscle isoforms-like.
   
 0.840
ENSSGRP00000006623
Troponin T, cardiac muscle isoforms-like.
   
 0.840
LOC107600409
Protein TFG-like.
   
 0.810
LOC107572152
Actin, alpha cardiac muscle 1-like.
   
 0.794
LOC107589168
Actin, alpha cardiac muscle 1-like.
   
 0.794
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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