Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107573484Torsin-4A. (390 aa)    
Predicted Functional Partners:
spart
Spartin isoform X1.
      
 0.643
ENSSGRP00000005068
Alpha-2-HS-glycoprotein-like.
     
 0.639
LOC107559377
Alpha-2-HS-glycoprotein-like isoform X1.
     
 0.639
ENSSGRP00000044808
Sulfatase modifying factor 1.
      
 0.584
LOC107585117
Sulfatase-modifying factor 1-like isoform X1.
      
 0.584
LOC107589327
COP9 signalosome complex subunit 2.
   
 
  0.537
LOC107553772
UPF0687 protein C20orf27 homolog.
      
 0.501
LOC107602386
Tyrosine-protein phosphatase non-receptor type 23-like isoform X1.
     
 0.493
LOC107591994
Tyrosine-protein phosphatase non-receptor type 23-like.
     
 0.493
COPS6
COP9 signalosome complex subunit 6.
   
 
  0.491
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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