STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE2O(E3-independent) E2 ubiquitin-conjugating enzyme. (1316 aa)    
Predicted Functional Partners:
LOC107572061
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.985
Trip12
E3 ubiquitin-protein ligase TRIP12.
   
 0.895
ENSSGRP00000084766
E3 ubiquitin-protein ligase TRIP12-like.
   
 0.895
ENSSGRP00000102802
Nucleosome assembly protein 1-like 1.
    
 
 0.890
nap1l1
Nucleosome assembly protein 1 like 1.
    
 
 0.890
ENSSGRP00000006963
Ubiquitin-conjugating enzyme E2 H-like.
   
 0.882
ENSSGRP00000020676
Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast).
   
 0.882
ENSSGRP00000059904
Ubiquitin-like modifier activating enzyme 5.
   
 0.864
uba5
Ubiquitin-like modifier-activating enzyme 5 isoform X1.
   
 0.864
ENSSGRP00000083272
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.860
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.