Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107578388Zinc finger MYM-type protein 4-like. (238 aa)    
Predicted Functional Partners:
ENSSGRP00000041107
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.889
LOC107590900
Lysine-specific histone demethylase 1A isoform X1.
   
 0.889
LOC107600466
Zinc finger protein 280C-like isoform X1.
   
 0.771
ENSSGRP00000105463
Zinc finger protein 280D-like.
   
 0.771
ubqln4
Ubiquilin-4.
    
 0.754
LOC107592173
Ubiquilin-4-like.
    
 0.754
LOC107597385
Zinc finger MYM-type protein 2-like isoform X1.
   
   0.713
LOC107569087
Zinc finger MYM-type protein 2-like isoform X1.
   
   0.713
ENSSGRP00000063258
annotation not available
    
   0.634
ENSSGRP00000046420
Ubiquitin-conjugating enzyme E2C.
     
 0.627
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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