Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000011166Regulator of nonsense transcripts 3B-like. (119 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.983
ENSSGRP00000099627
annotation not available
   
 0.983
ENSSGRP00000007313
Regulator of nonsense transcripts 1-like.
    
 0.979
upf1
Regulator of nonsense transcripts 1 isoform X1.
    
 0.979
eif4a3
Eukaryotic initiation factor 4A-III.
   
 0.967
ENSSGRP00000003666
SMG5 nonsense mediated mRNA decay factor.
   
 0.959
ENSSGRP00000096547
SMG5 nonsense mediated mRNA decay factor.
   
 0.959
LOC107585049
Protein CASC3.
    
 0.943
ENSSGRP00000099256
Protein CASC3-like.
    
 0.943
LOC107592145
RNA-binding protein 8A.
   
 0.942
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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