Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DCUN1D1Defective in cullin neddylation 1 domain containing 1. (228 aa)    
Predicted Functional Partners:
ENSSGRP00000005442
RING-box protein 1.
    
 0.927
rbx1
E3 ubiquitin-protein ligase RBX1.
    
 0.927
LOC107566887
NEDD8-conjugating enzyme UBE2F isoform X1.
    
 0.880
LOC107570967
Ubiquitin-conjugating enzyme E2 M.
    
 0.880
LOC107573069
NEDD8-conjugating enzyme Ubc12-like.
    
 0.880
LOC107556276
NEDD8-conjugating enzyme UBE2F-like.
    
 0.880
LOC107551625
Cullin-5-like.
   
 0.873
LOC107582587
Cullin-5.
   
 0.873
ENSSGRP00000092179
Cullin-5-like.
   
 0.873
LOC107548163
Cullin-5-like isoform X1.
   
 0.873
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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