Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107554161Rab11 family-interacting protein 3-like isoform X1. (1421 aa)    
Predicted Functional Partners:
LOC107601264
Rab11 family-interacting protein 3/4.
     
  0.910
LOC107553307
Rab11 family-interacting protein 3/4.
     
  0.849
ENSSGRP00000079750
Rab11 family-interacting protein 4B-like.
     
  0.849
rab3ip
Rab-3A-interacting protein isoform X1.
    
 0.830
LOC107554773
Rab-3A-interacting protein-like.
    
 0.830
LOC107552705
Ras-related protein Rab-11B.
    
 0.828
LOC107583770
Ras-related protein Rab-11A.
    
 0.828
LOC107599444
Ras-related protein Rab-11B-like.
    
 0.828
ENSSGRP00000083278
annotation not available
    
 0.828
ENSSGRP00000097339
Ras-related protein Rab-11A-like.
    
 0.828
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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