Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmcd1LIM and cysteine-rich domains protein 1. (158 aa)    
Predicted Functional Partners:
ENSSGRP00000004386
annotation not available
    
 0.890
ENSSGRP00000011170
GATA-binding factor 6-B-like isoform X1.
    
 0.890
Mrps10
28S ribosomal protein S10, mitochondrial.
      
 0.766
LOC107557004
Transcription factor GATA-4-like.
    
 0.749
LOC107564601
Transcription factor GATA-4-like.
    
 0.749
ENSSGRP00000039861
annotation not available
    
 0.749
GATA5
Transcription factor GATA-5-like.
    
 0.749
LOC107559469
Transcription factor GATA-5-like.
    
 0.749
VSTM2B
V-set and transmembrane domain-containing protein 2B.
      
 0.745
ENSSGRP00000082567
V-set and transmembrane domain-containing protein 2B-like.
      
 0.745
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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