LOC107548474 protein (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107548474

Histone H3.3-like. (136 aa)

Predicted Functional Partners:

LOC107555719

0.894

LOC107555719-2

0.894

LOC107555719-3

0.894

kdm6a

0.870

LOC107554308

0.867

LOC107586158

0.867

ENSSGRP00000053783

0.863

LOC107556731

0.863

kdm6b

0.863

ENSSGRP00000092813

0.863

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000053783	ENSSGRP00000092813	ENSSGRP00000053783	ENSSGRP00000092813	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6A.	0.923
ENSSGRP00000053783	LOC107548474	ENSSGRP00000053783	ENSSGRP00000011477	Lysine (K)-specific demethylase 6A, like.	Histone H3.3-like.	0.863
ENSSGRP00000053783	LOC107554308	ENSSGRP00000053783	ENSSGRP00000009754	Lysine (K)-specific demethylase 6A, like.	Lysine-specific demethylase 6B-like isoform X1.	0.787
ENSSGRP00000053783	LOC107555719	ENSSGRP00000053783	ENSSGRP00000004362	Lysine (K)-specific demethylase 6A, like.	Histone H4-like.	0.746
ENSSGRP00000053783	LOC107555719-2	ENSSGRP00000053783	ENSSGRP00000005128	Lysine (K)-specific demethylase 6A, like.	Histone H4.	0.746
ENSSGRP00000053783	LOC107555719-3	ENSSGRP00000053783	ENSSGRP00000006568	Lysine (K)-specific demethylase 6A, like.	Histone H4.	0.746
ENSSGRP00000053783	LOC107556731	ENSSGRP00000053783	ENSSGRP00000062202	Lysine (K)-specific demethylase 6A, like.	Lysine-specific demethylase 6A-like.	0.774
ENSSGRP00000053783	LOC107586158	ENSSGRP00000053783	ENSSGRP00000096101	Lysine (K)-specific demethylase 6A, like.	Lysine-specific demethylase 6B-like isoform X1.	0.787
ENSSGRP00000053783	kdm6a	ENSSGRP00000053783	ENSSGRP00000110938	Lysine (K)-specific demethylase 6A, like.	Lysine-specific demethylase 6A isoform X1.	0.776
ENSSGRP00000053783	kdm6b	ENSSGRP00000053783	ENSSGRP00000082842	Lysine (K)-specific demethylase 6A, like.	Lysine-specific demethylase 6B.	0.781
ENSSGRP00000092813	ENSSGRP00000053783	ENSSGRP00000092813	ENSSGRP00000053783	Lysine (K)-specific demethylase 6A.	Lysine (K)-specific demethylase 6A, like.	0.923
ENSSGRP00000092813	LOC107548474	ENSSGRP00000092813	ENSSGRP00000011477	Lysine (K)-specific demethylase 6A.	Histone H3.3-like.	0.863
ENSSGRP00000092813	LOC107554308	ENSSGRP00000092813	ENSSGRP00000009754	Lysine (K)-specific demethylase 6A.	Lysine-specific demethylase 6B-like isoform X1.	0.844
ENSSGRP00000092813	LOC107555719	ENSSGRP00000092813	ENSSGRP00000004362	Lysine (K)-specific demethylase 6A.	Histone H4-like.	0.746
ENSSGRP00000092813	LOC107555719-2	ENSSGRP00000092813	ENSSGRP00000005128	Lysine (K)-specific demethylase 6A.	Histone H4.	0.746
ENSSGRP00000092813	LOC107555719-3	ENSSGRP00000092813	ENSSGRP00000006568	Lysine (K)-specific demethylase 6A.	Histone H4.	0.746
ENSSGRP00000092813	LOC107556731	ENSSGRP00000092813	ENSSGRP00000062202	Lysine (K)-specific demethylase 6A.	Lysine-specific demethylase 6A-like.	0.923
ENSSGRP00000092813	LOC107586158	ENSSGRP00000092813	ENSSGRP00000096101	Lysine (K)-specific demethylase 6A.	Lysine-specific demethylase 6B-like isoform X1.	0.844
ENSSGRP00000092813	kdm6a	ENSSGRP00000092813	ENSSGRP00000110938	Lysine (K)-specific demethylase 6A.	Lysine-specific demethylase 6A isoform X1.	0.922
ENSSGRP00000092813	kdm6b	ENSSGRP00000092813	ENSSGRP00000082842	Lysine (K)-specific demethylase 6A.	Lysine-specific demethylase 6B.	0.837