STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSGRP00000011480TruB pseudouridine (psi) synthase family member 1. (232 aa)    
Predicted Functional Partners:
LOC107590037
H/ACA ribonucleoprotein complex subunit 2-like protein.
  
 0.986
ENSSGRP00000006636
NOP10 ribonucleoprotein homolog (yeast).
   
 0.986
LOC107557075
H/ACA ribonucleoprotein complex subunit 2-like protein.
  
 0.986
LOC107586061
H/ACA ribonucleoprotein complex subunit 1-like.
   
 0.977
ENSSGRP00000080218
GAR1 homolog, ribonucleoprotein.
   
 0.977
ENSSGRP00000031192
Nucleolar protein 56-like isoform X1.
   
 
 0.969
ENSSGRP00000095040
Nucleolar protein 56-like.
   
 
 0.969
nop58
Nucleolar protein 58 isoform X1.
  
 
 0.961
ENSSGRP00000107996
annotation not available
  
 
 0.961
LOC107592227
RRNA 2'-O-methyltransferase fibrillarin-like.
   
 
 0.959
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.