Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107554213Histone H1.0-like. (200 aa)    
Predicted Functional Partners:
H3-2
H3.2 histone (putative).
   
 0.843
LOC107588951
Histone H2A.Z.
   
 
 0.814
ENSSGRP00000065210
annotation not available
   
 
 0.814
LOC107599604
Histone H2A.V isoform X1.
   
 
 0.814
LOC107584441
Histone H1x-like.
   
 
 0.799
LOC107568179
Histone H1x-like.
   
 
 0.799
ENSSGRP00000005851
annotation not available
   
 
 0.778
ENSSGRP00000050506
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.770
dffb
DNA fragmentation factor, 40 kD, beta subunit.
    
 0.770
LOC107558583
Cyclin-dependent kinase 6-like.
   
 
 0.734
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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