Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107583113Coatomer subunit beta' isoform X1. (946 aa)    
Predicted Functional Partners:
copb1
Coatomer subunit beta.
   
 0.998
LOC107593350
Coatomer subunit beta-like.
   
 0.998
LOC107557408
Coatomer subunit alpha.
   
0.998
ENSSGRP00000072787
Coatomer subunit alpha-like.
   
0.998
LOC107592519
Coatomer subunit gamma-2.
   
 0.995
LOC107555542
Coatomer subunit gamma-2-like.
   
 0.995
ENSSGRP00000020841
Coatomer subunit epsilon-like.
   
 0.994
cope
Coatomer protein complex subunit epsilon.
   
 0.994
ENSSGRP00000043253
Coatomer protein complex, subunit epsilon.
   
 0.994
LOC107587342
Coatomer subunit delta-like.
   
 0.992
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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