Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107559710Basic helix-loop-helix transcription factor scleraxis-like. (201 aa)    
Predicted Functional Partners:
LOC107560436
Tenomodulin-like isoform X1.
      
 0.742
LOC107593206
Tenomodulin-like.
      
 0.742
thbs4
Thrombospondin 2/3/4/5.
      
 0.577
ENSSGRP00000041897
Thrombospondin-4-B-like isoform X1.
      
 0.577
LOC107599356
Thrombospondin-4-B-like.
      
 0.550
LOC107585629
Thrombospondin-4-B isoform X1.
      
 0.550
LOC107549686
Runt-related transcription factor 2-like.
    
 0.530
ENSSGRP00000078878
Runt-related transcription factor 2-like.
    
 0.530
LOC107594081
Runt-related transcription factor 2-like isoform X1.
    
 0.527
ENSSGRP00000112798
RUNX family transcription factor 2a.
    
 0.527
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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