STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107559713Protein HGH1 homolog. (267 aa)    
Predicted Functional Partners:
Ttc4
Tetratricopeptide repeat protein 4.
   
 
 0.974
ENSSGRP00000030115
Tetratricopeptide repeat domain 4.
   
 
 0.974
rpf2
Ribosome production factor 2 homolog.
   
    0.866
pwp1
Periodic tryptophan protein 1 homolog.
   
  
 0.863
LOC107583586
U3 small nucleolar RNA-associated protein 5.
   
   0.861
LOC107583058
U3 small nucleolar RNA-associated protein 5.
   
   0.861
ENSSGRP00000064194
NIN1 (RPN12) binding protein 1 homolog.
   
  
 0.831
Nob1
RNA-binding protein NOB1.
   
  
 0.831
LOC107589545
TRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like.
   
   0.812
tbl3
U3 small nucleolar RNA-associated protein 13.
   
    0.812
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.