Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
ENSSGRP00000011601threonyl-tRNA synthetase 1. (448 aa)    
Predicted Functional Partners:
Yars
Tyrosine--tRNA ligase, cytoplasmic.
  
 
 0.950
ENSSGRP00000102125
Tyrosine--tRNA ligase, cytoplasmic-like.
  
 
 0.915
LOC107553342
Threonine--tRNA ligase, cytoplasmic-like.
     
  0.913
lars1
Leucine--tRNA ligase, cytoplasmic.
  
 
 0.912
LARS1
leucyl-tRNA synthetase 1.
  
 
 0.912
ENSSGRP00000019923
annotation not available
     
  0.910
ENSSGRP00000013753
Lysine--tRNA ligase-like isoform X1.
  
 
 0.891
LOC107552967
Lysyl-tRNA synthetase, class II.
  
 
 0.891
rars1
Arginine--tRNA ligase, cytoplasmic.
  
 
 0.889
ENSSGRP00000027669
annotation not available
  
 
 0.889
Your Current Organism:
Sinocyclocheilus grahami
NCBI taxonomy Id: 75366
Other names: S. grahami
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